Welcome to SCDCdm’s documentation!

This package contains statistical models to analyze changes in compositional data, especially from single-cell RNA-seq experiments.

The package is available on github.

Please also check out the tutorial that goes over the most important functionalities.

Contents:

• Installation
• Data
  • Data generation methods
  • Data import methods
• Models
  • Model structure
  • Inference
  • Result analysis

Modules

scdcdm.model.dirichlet_models
scdcdm.model.other_models
scdcdm.util.cell_composition_data	Helper functions to convert single-cell data to scdcdm compositional analysis data
scdcdm.util.comp_ana
scdcdm.util.data_generation	Toolbox for simulating compositional data from ScRNA-seq
scdcdm.util.multi_parameter_analysis_functions	Functions for plotting and analyzing the results from running models over multiple parameter sets
scdcdm.util.multi_parameter_sampling
scdcdm.util.result_classes	Results class that summarizes the results of the different inference methods and calculates test statistics

Indices and tables

• Index
• Module Index
• Search Page